Fixed Doxyfile

cmake/Doxyfile.in

 # DoxygenLayout.xml, doxygen will parse it automatically even if the LAYOUT_FILE
 # tag is left empty.
 
-LAYOUT_FILE            = DoxygenLayout.xml
+LAYOUT_FILE            = 
 
 # The CITE_BIB_FILES tag can be used to specify one or more bib files containing
 # the reference definitions. This must be a list of .bib files. The .bib
 # spaces.
 # Note: If this tag is empty the current directory is searched.
 
-INPUT                  = @PROJECT_SOURCE_DIR@/include @PROJECT_SOURCE_DIR@/src @PROJECT_SOURCE_DIR@/test
+INPUT                  = @PROJECT_SOURCE_DIR@
 
 # This tag can be used to specify the character encoding of the source files
 # that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
 # Note that relative paths are relative to the directory from which doxygen is
 # run.
 
-EXCLUDE                = bin data mac_dist test/greatest.h
+EXCLUDE                = bin build cmake data test/greatest.h
 
 # The EXCLUDE_SYMLINKS tag can be used to select whether or not files or
 # directories that are symbolic links (a Unix file system feature) are excluded