Co-Authored-By: InsanityAutomation <insanityautomation@users.noreply.github.com>

Mostly from the L6470-oriented PR

* Make CardReader a static class
* Make CardReader flags into bitfields

* Apply #pragma once in headers
* Adjust some thermistors formatting
* Misc cleanup and formatting

- Fix an error in the return value of `sd_mmc_spi_read_capacity` which was causing the host OS to read beyond the last sector in the card.
- Clean up the USB flashdrive code and add better debugging.

Use macros that explicitly avoid double-evaluation and can be used for any datatype, replacing `min`, `max`, `abs`, `fabs`, `labs`, and `FABS`.

Co-Authored-By: ejtagle <ejtagle@hotmail.com>

- Watchdog reset during SD Card initialization.
- Move `DebugMonitor` to `DebugMonitor_Due.cpp`.
- Since the watchdog is enabled on boot do extra resets during init.
- Have `thermalManager` do watchdog reset before its ISR starts to prevent reset.
- Ensure that timers are stopped before reprogramming them to address tone issues.
- Improve SAM3XE reset when reflashed through the native port.