Based on MarlinFirmware/MarlinDev#200 from @eboston

- In `stepper.h` init `count_direction` array
- In `ultralcd.cpp` init `autotune_temp` array

The LCD menu items for SD printing pause/stop have been updated to control
also the print job timer. This commit also fixes a small output bug with
M78, the failed print counter was displaying the wrong value.

Speedup sreen update delay
and correct a comment.

A module division by 10 is slooooow. (powers of 2 are fast - but then you can AND a bitmask with the same result)

So that `ultralcd.cpp` doesn’t need to worry about the details.

Follow-up the PR #3643(Temperature singleton)

・Change from fanSpeedSoftPwm[0] to thermalManager.fanSpeedSoftPwm[0] in planner.cpp
It fix compilation error when FAN_SOFT_PWM is enabled.

・Remove declaration of setExtruderAutoFanState() in temperature.h
Because that function was abolished.

・Change from babystepsTodo to thermalManager.babystepsTodo in ultralcd.cpp
It fix compilation errors when BABYSTEPPING is enabled.

Additional follow-up the PR #3631(Encapsulate Stepper, Planner, Endstops in singleton classes)

・Change from abort_on_endstop_hit to stepper.abort_on_endstop_hit in endstop.cpp, Marlin_main.cpp, and ultralcd.cpp
・Add include path to cardreader.h and temperature.h in endstop.cpp(for CardReader class and disable_all_heaters())
It fix compilation error when ABORT_ON_ENDSTOP_HIT_FEATURE_ENABLED and SDSUPPORT are enabled.

・Change from digipot_current() to stepper.digipot_current() in Marlin_main.cpp
・Change from digitalPotWrite() to stepper.digitalPotWrite() in Marlin_main.cpp
It fix compilation errors when HAS_DIGIPOTSS is enabled.

・Change from microstep_mode() to stepper.microstep_mode() in Marlin_main.cpp
・Change attribute of microstep_mode() from private to public in stepper.h
・Change from microstep_readings() to stepper.microstep_readings() in Marlin_main.cpp
・Change from microstep_ms() to stepper.microstep_ms() in Marlin_main.
It fix compilation errors when HAS_MICROSTEPS is enabled.

When setting the bed temp via M140/M190 if the thermistor does not read an increase of WATCH_BED_TEMP_INCREASE degrees by WATCH_BED_TEMP_PERIOD seconds then it will throw "Error:Heating failed, system stopped! Heater_ID: bed" and call the kill() function.

Conflicts:
	Marlin/Configuration_adv.h

Trying to preheat a non-existent extruder causes a crash.